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      "putCode": 211648647,
      "title": "Chromosome‐Level Reference Genome of an Endemic, Endangered Long‐Armed Scarab (Cheirotonus formosanus): Discovery of a Putative Y‐Linked Scaffold and Demographic History",
      "journal": "Ecology and Evolution",
      "year": "2026",
      "doi": "10.1002/ece3.73483",
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      "title": "Functional synaptic connectivity of engrafted spinal cord neurons with hindlimb motor circuitry in the injured spinal cord",
      "journal": "Nature Communications",
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      "doi": "10.1038/s41467-025-65395-7",
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      "authors": "Ashley Tucker, Angelina Baltazar, Jaclyn T. Eisdorfer, Joshua K. Thackray, Katie Vo, Hannah Thomas, Avnika Tandon, Joshua Moses, Brendan Singletary, Tucker Gillespie, Ashley Smith, Anna Pauken, Sneha Nadella, Michael Pitonak, Sunjay Letchuman, Julius Jang, Michael Totty, Frank L. Jalufka, Miriam Aceves, Andrew F. Adler, Stephen Maren, Heath Blackmon, Dylan A. McCreedy, Victoria Abraira, Jennifer N. Dulin"
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      "title": "Drivers of achiasmatic meiosis: sexual antagonism versus heteromorphy-dependent aneuploidy across sex-chromosome divergence",
      "journal": "G3: Genes, Genomes, Genetics",
      "year": "2025",
      "doi": "10.1093/g3journal/jkaf217",
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      "title": "Funding Distributions, Trends, Gaps, and Policy Implications for Spinal Cord Injury Research: A Systematic Analysis of U.S. Federal Funds",
      "journal": "Journal of Neurotrauma",
      "year": "2025",
      "doi": "10.1177/08977151251392895",
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      "authors": "Tucker Gillespie, Andrew Buxton, Bethany R. Kondiles, Miranda Leal-Garcia, Mia R. Pacheco, Ashley V. Tran, Katie Vo, Lucy Abu, James Barr, Tanya A. Barretto, Jason Biundo, Sam Duenwald, Abigail Evans, Timothy N. Friedman, Isabella Gadaleta, Saahas Ganesh, Bryson Gottschall, Peyton Green, Grant Lee, Lilian Liu, Raza N. Malik, Elizabeth J. Nava, Chiara Sorani, Vansh Tandon, Hannah Thomas, Kyndal Thomas, Chris Barr, Ian Burkhart, Dylan A. McCreedy, Peter Nowell, Heath Blackmon, Alexander G. Rabchevsky, Matthew Rodreick, Abel Torres-Espín, Jennifer N. Dulin"
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      "title": "Polly: An R package for genotyping microsatellites and detecting highly polymorphic DNA markers from short‐read data",
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      "title": "Wright was right: leveraging old data and new methods to illustrate the critical role of epistasis in genetics and evolution",
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      "doi": "10.1093/evolut/qpae003",
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      "title": "Drift drives the evolution of chromosome number I: The impact of trait transitions on genome evolution in Coleoptera",
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      "title": "Domestication is associated with increased interspecific hybrid compatibility in landfowl (order: Galliformes)",
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      "title": "Tempo and Mode of Genome Structure Evolution in Insects",
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      "year": "2023",
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      "authors": "James M. Alfieri, Michelle M. Jonika, Jennifer N. Dulin, Heath Blackmon"
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      "title": "Genomic investigation refutes record of most diverged avian hybrid",
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      "year": "2023",
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      "title": "A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants",
      "journal": "BMC Biology",
      "year": "2023",
      "doi": "10.1186/s12915-023-01758-0",
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      "title": "Fourth Report on Chicken Genes and Chromosomes 2022",
      "journal": "Cytogenetic and Genome Research",
      "year": "2023",
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      "title": "Effects of biological sex mismatch on neural progenitor cell transplantation for spinal cord injury in mice.",
      "journal": "Nature communications",
      "year": "2022",
      "doi": "10.1038/s41467-022-33134-x",
      "doiUrl": "https://doi.org/10.1038/s41467-022-33134-x",
      "type": "journal-article",
      "authors": "Pitonak M, Aceves M, Kumar PA, Dampf G, Green P, Tucker A, Dietz V, Miranda D, Letchuman S, Jonika MM, Bautista D, Blackmon H, Dulin JN"
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    {
      "putCode": 113024202,
      "title": "Phylogenetics in space: How continuous spatial structure impacts tree inference",
      "journal": "Molecular Phylogenetics and Evolution",
      "year": "2022",
      "doi": "10.1016/j.ympev.2022.107505",
      "doiUrl": "https://doi.org/10.1016/j.ympev.2022.107505",
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      "authors": "Zachary B. Hancock, Emma S. Lehmberg, Heath Blackmon"
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      "title": "Why not Y naught",
      "journal": "Heredity",
      "year": "2022",
      "doi": "10.1038/s41437-022-00543-z",
      "doiUrl": "https://doi.org/10.1038/s41437-022-00543-z",
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      "authors": "Michelle M. Jonika, James M. Alfieri, Terrence Sylvester, Andrew Riley Buhrow, Heath Blackmon"
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      "title": "CaveCrawler: an interactive analysis suite for cavefish bioinformatics",
      "journal": "G3 Genes|Genomes|Genetics",
      "year": "2022",
      "doi": "10.1093/g3journal/jkac132",
      "doiUrl": "https://doi.org/10.1093/g3journal/jkac132",
      "type": "journal-article",
      "authors": "Annabel Perry, Suzanne E McGaugh, Alex C Keene, Heath Blackmon"
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      "putCode": 121896063,
      "title": "Diptera and <i>Drosophila</i> Karyotype Databases: A Useful Dataset to Guide Evolutionary and Genomic Studies.",
      "journal": "Frontiers in ecology and evolution",
      "year": "2022",
      "doi": "10.3389/fevo.2022.832378",
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      "authors": "Morelli MW, Blackmon H, Hjelmen CE"
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      "title": "A Primer for Single-Cell Sequencing in Non-Model Organisms. ",
      "journal": "Genes",
      "year": "2022",
      "doi": "10.3390/genes13020380",
      "doiUrl": "https://doi.org/10.3390/genes13020380",
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      "authors": "Alfieri JM, Wang G, Jonika MM, Gill CA, Blackmon H, Athrey GN"
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      "putCode": 106981051,
      "title": "Retrogene survival is not impacted by linkage relationships",
      "journal": "PeerJ",
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      "doi": "10.7717/peerj.12822",
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      "title": "Simulation Tests of Methods in Evolution, Ecology, and Systematics: Pitfalls, Progress, and Principles",
      "journal": "Annual Review of Ecology, Evolution, and Systematics",
      "year": "2022",
      "doi": "10.1146/annurev-ecolsys-102320-093722",
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      "title": "Of Traits and Trees: Probabilistic Distances under Continuous Trait Models for Dissecting the Interplay among Phylogeny, Model, and Data.",
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      "doi": "10.1093/sysbio/syab009",
      "doiUrl": "https://doi.org/10.1093/sysbio/syab009",
      "type": "journal-article",
      "authors": "Adams RH, Blackmon H, DeGiorgio M"
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    {
      "putCode": 81671597,
      "title": "Ghosts of a Structured Past: Impacts of Ancestral Patterns of Isolation-by-Distance on Divergence-Time Estimation",
      "journal": "Journal of Heredity",
      "year": "2020",
      "doi": "10.1093/jhered/esaa042",
      "doiUrl": "https://doi.org/10.1093/jhered/esaa042",
      "type": "journal-article",
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      "title": "Chromosome number evolves at equal rates in holocentric and monocentric clades",
      "journal": "PLOS Genetics",
      "year": "2020",
      "doi": "10.1371/journal.pgen.1009076",
      "doiUrl": "https://doi.org/10.1371/journal.pgen.1009076",
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      "putCode": 81170318,
      "title": "Lineage-specific patterns of chromosome evolution are the rule not the exception in Polyneoptera insects",
      "journal": "Proceedings of the Royal Society B: Biological Sciences",
      "year": "2020",
      "doi": "10.1098/rspb.2020.1388",
      "doiUrl": "https://doi.org/10.1098/rspb.2020.1388",
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      "authors": "Terrence Sylvester, Carl E. Hjelmen, Shawn J. Hanrahan, Paul A. Lenhart, J. Spencer Johnston, Heath Blackmon"
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    {
      "putCode": 78842606,
      "title": "The March of the Beetles: Epistatic Components Dominate Divergence in Dispersal Tendency in Tribolium castaneum",
      "journal": "Journal of Heredity",
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      "doi": "10.1093/jhered/esaa030",
      "doiUrl": "https://doi.org/10.1093/jhered/esaa030",
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      "putCode": 78927524,
      "title": "Mode and Tempo of Microsatellite Evolution across 300 Million Years of Insect Evolution",
      "journal": "Genes",
      "year": "2020",
      "doi": "10.3390/genes11080945",
      "doiUrl": "https://doi.org/10.3390/genes11080945",
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      "putCode": 74384962,
      "title": "Thoracic underreplication in Drosophila species estimates a minimum genome size and the dynamics of added DNA",
      "journal": "Evolution",
      "year": "2020",
      "doi": "10.1111/evo.14022",
      "doiUrl": "https://doi.org/10.1111/evo.14022",
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      "title": "The probability of fusions joining sex chromosomes and autosomes: Sex Autosome Fusions",
      "journal": "Biology Letters",
      "year": "2020",
      "doi": "10.1098/rsbl.2020.0648",
      "doiUrl": "https://doi.org/10.1098/rsbl.2020.0648",
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      "putCode": 59752525,
      "title": "A database of amphibian karyotypes",
      "journal": "Chromosome Research",
      "year": "2019",
      "doi": "10.1007/s10577-019-09613-1",
      "doiUrl": "https://doi.org/10.1007/s10577-019-09613-1",
      "type": "journal-article",
      "authors": "Riddhi D. Perkins, Julio Rincones Gamboa, Michelle M Jonika, Johnathan Lo, Amy Shum, Richard H. Adams, Heath Blackmon"
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      "putCode": 62741923,
      "title": "Genome Size Evolution Differs Between Drosophila Subgenera with Striking Differences in Male and Female Genome Size in Sophophora",
      "journal": "G3 Genes|Genomes|Genetics",
      "year": "2019",
      "doi": "10.1534/g3.119.400560",
      "doiUrl": "https://doi.org/10.1534/g3.119.400560",
      "type": "journal-article",
      "authors": "Carl E Hjelmen, Heath Blackmon, V Renee Holmes, Crystal G Burrus, J Spencer Johnston"
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      "putCode": 62741924,
      "title": "micRocounter: Microsatellite Characterization in Genome Assemblies",
      "journal": "G3&amp;#58; Genes|Genomes|Genetics",
      "year": "2019",
      "doi": "10.1534/g3.119.400335",
      "doiUrl": "https://doi.org/10.1534/g3.119.400335",
      "type": "journal-article",
      "authors": "Johnathan Lo, Michelle M. Jonika, Heath Blackmon"
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      "putCode": 54418003,
      "title": "Inferring the potentially complex genetic architectures of adaptation, sexual dimorphism and genotype by environment interactions by partitioning of mean phenotypes",
      "journal": "Journal of Evolutionary Biology",
      "year": "2019",
      "doi": "10.1111/jeb.13421",
      "doiUrl": "https://doi.org/10.1111/jeb.13421",
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      "putCode": 53659741,
      "title": "Meiotic drive shapes rates of karyotype evolution in mammals",
      "journal": "Evolution",
      "year": "2019",
      "doi": "10.1111/evo.13682",
      "doiUrl": "https://doi.org/10.1111/evo.13682",
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      "authors": "Heath Blackmon, Joshua Justison, Itay Mayrose, Emma E. Goldberg"
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      "putCode": 55630178,
      "title": "Contrasting Patterns of Rapid Molecular Evolution within the p53 Network across Mammal and Sauropsid Lineages.",
      "journal": "Genome biology and evolution",
      "year": "2019",
      "doi": "10.1093/gbe/evy273",
      "doiUrl": "https://doi.org/10.1093/gbe/evy273",
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      "title": "The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes. ",
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      "year": "2019",
      "doi": "10.1101/gr.240952.118",
      "doiUrl": "https://doi.org/10.1101/gr.240952.118",
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      "authors": "Schield DR, Card DC, Hales NR, Perry BW, Pasquesi GM, Blackmon H, Adams RH, Corbin AB, Smith CF, Ramesh B, Demuth JP, Betrán E, Tollis M, Meik JM, Castoe TA"
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      "putCode": 56103963,
      "title": "Investigating a Photolytic Metabolite in the Nocturnal Grasshopper Schistocerca ceratiola (Orthoptera: Acrididae)",
      "journal": "Annals of the Entomological Society of America",
      "year": "2018",
      "doi": "10.1093/aesa/say048",
      "doiUrl": "https://doi.org/10.1093/aesa/say048",
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      "authors": "Cody C Gale, Eli Borrego, Heath Blackmon, James K Harper, David Richardson, Hojun Song"
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    {
      "putCode": 29372242,
      "title": "Sex Determination, Sex Chromosomes, and Karyotype Evolution in Insects.",
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      "doiUrl": "",
      "type": "journal-article",
      "authors": "Blackmon H, Ross L, Bachtrog D"
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      "putCode": 43263004,
      "title": "Long-term fragility of Y chromosomes is dominated by short-term resolution of sexual antagonism",
      "journal": "Genetics",
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      "title": "GppFst: Genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data.",
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      "doi": "10.1093/bioinformatics/btw795",
      "doiUrl": "https://doi.org/10.1093/bioinformatics/btw795",
      "type": "journal-article",
      "authors": "Adams RH, Schield DR, Card DC, Blackmon H, Castoe TA"
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      "title": "Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution.",
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      "doi": "10.1139/gen-2015-0124",
      "doiUrl": "https://doi.org/10.1139/gen-2015-0124",
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      "authors": "Adams RH, Blackmon H, Reyes-Velasco J, Schield DR, Card DC, Andrew AL, Waynewood N, Castoe TA"
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      "title": "An information-theoretic approach to estimating the composite genetic effects contributing to variation among generation means: Moving beyond the joint-scaling test for line cross analysis.",
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      "year": "2016",
      "doi": "10.1111/evo.12844",
      "doiUrl": "https://doi.org/10.1111/evo.12844",
      "type": "journal-article",
      "authors": "Blackmon H, Demuth JP"
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      "putCode": 29372210,
      "title": "Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface",
      "journal": "Genome Biology",
      "year": "2016",
      "doi": "10.1186/s13059-016-1088-8",
      "doiUrl": "https://doi.org/10.1186/s13059-016-1088-8",
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      "title": "Sex Determination",
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      "year": "2016",
      "doi": "10.1016/B978-0-12-800049-6.00146-3",
      "doiUrl": "https://doi.org/10.1016/B978-0-12-800049-6.00146-3",
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      "title": "The evolutionary dynamics of haplodiploidy: genome architecture and haploid viability",
      "journal": "Evolution",
      "year": "2015",
      "doi": "10.1111/evo.12792",
      "doiUrl": "https://doi.org/10.1111/evo.12792",
      "type": "journal-article",
      "authors": "Heath Blackmon, Nate B. Hardy, Laura Ross"
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    {
      "putCode": 17890338,
      "title": "The fragile Y hypothesis: Y chromosome aneuploidy as a selective pressure in sex chromosome and meiotic mechanism evolution",
      "journal": "BioEssays",
      "year": "2015",
      "doi": "10.1002/bies.201500040",
      "doiUrl": "https://doi.org/10.1002/bies.201500040",
      "type": "journal-article",
      "authors": "Heath Blackmon, Jeffery P. Demuth"
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      "putCode": 16816565,
      "title": "Coleoptera Karyotype Database",
      "journal": "The Coleopterists Bulletin",
      "year": "2015",
      "doi": "10.1649/0010-065x-69.1.174",
      "doiUrl": "https://doi.org/10.1649/0010-065x-69.1.174",
      "type": "journal-article",
      "authors": "Heath Blackmon, Jeffery P. Demuth"
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    {
      "putCode": 16816564,
      "title": "Genomic origins of insect sex chromosomes",
      "journal": "Current Opinion in Insect Science",
      "year": "2015",
      "doi": "10.1016/j.cois.2014.12.003",
      "doiUrl": "https://doi.org/10.1016/j.cois.2014.12.003",
      "type": "journal-article",
      "authors": "Heath Blackmon, Jeffery P Demuth"
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      "putCode": 17890372,
      "title": "Recombination, chromosome number and eusociality in the Hymenoptera.",
      "journal": "",
      "year": "2015",
      "doi": "10.1111/jeb.12543",
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