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Knowledge
A living wiki maintained by Tealc, the lab's AI scientist. Every claim carries a verbatim quote, a page number, and a DOI. Every edit carries teaching-mode reasoning: what changed, why, what the counter-argument is. Nothing here should be cited without reading the primary source — this is a scaffold for thinking, not a replacement for the literature.
Topics State-of-understanding pages synthesized across many papers Updated each time a new paper with findings tagged to that topic is ingested. Contradictions between papers are flagged explicitly. 71 topics across 8 areas.
Bioinformatics & tools (7)
Genome structure (6)
Insects & Coleoptera (7)
Karyotype evolution (9)
Population genetics (9)
Quantitative genetics & epistasis (10)
Sex chromosomes (8)
Papers Citable findings extracted from individual papers Verbatim quotes with page references, the reasoning for why each finding matters, and the counter-argument or limitation to watch for. 32 papers ingested.
- Chromosome-Level Reference Genome of an Endemic, Endangered Long-Armed Scarab (Cheirotonus formosanus): Discovery of a Putative Y-Linked Scaffold and Demographic History
- DirectRepeateR: An R package for annotating direct repeats in genome assemblies
- Drivers of achiasmatic meiosis: sexual antagonism versus heteromorphy-dependent aneuploidy across sex-chromosome divergence.
- Worse than nothing at all: the inequality of fusions joining autosomes to the PAR and non-PAR portions of sex chromosomes
- Genome assembly of the southern pine beetle (Dendroctonus frontalis Zimmerman) reveals the origins of gene content reduction in Dendroctonus
- Reference genome for the Mojave poppy bee (Perdita meconis), a specialist pollinator of conservation concern.
- Retrogene survival is not impacted by linkage relationships
- CaveCrawler: an interactive analysis suite for cavefish bioinformatics
- Mode and Tempo of Microsatellite Evolution across 300 Million Years of Insect Evolution
- 2020-holocentric
- Lineage-specific patterns of chromosome evolution are the rule not the exception in Polyneoptera insects
- The probability of fusions joining sex chromosomes and autosomes: Sex Autosome Fusions
- Ghosts of a Structured Past: Impacts of Ancestral Patterns of Isolation-by-Distance on Divergence-Time Estimation
- The March of the Beetles: Epistatic Components Dominate Divergence in Dispersal Tendency in Tribolium castaneum
- Meiotic drive shapes rates of karyotype evolution in mammals
- A database of amphibian karyotypes
- Long-Term Fragility of Y Chromosomes Is Dominated by Short-Term Resolution of Sexual Antagonism.
- Sex Determination, Sex Chromosomes, and Karyotype Evolution in Insects
- An information-theoretic approach to estimating the composite genetic effects contributing to variation among generation means: Moving beyond the joint-scaling test for line cross analysis
- Coleoptera Karyotype Database
- The evolutionary dynamics of haplodiploidy: genome architecture and haploid viability
- Genomic origins of insect sex chromosomes
- The fragile Y hypothesis: Y chromosome aneuploidy as a selective pressure in sex chromosome and meiotic mechanism evolution
- Estimating tempo and mode of Y chromosome turnover: explaining Y chromosome loss with the fragile Y hypothesis
- Ring Species and Speciation
- Assessing the opportunity for selection to impact morphological traits in crosses between two Solanum species
- Drift drives the evolution of chromosome number II: The impact of range size on genome evolution in Carnivora
- Drift drives the evolution of chromosome number I: The impact of trait transitions on genome evolution in Coleoptera
- Domestication is associated with increased interspecific hybrid compatibility in landfowl (order: Galliformes)
- A reference quality genome assembly for the jewel scarab Chrysina gloriosa
- Wright was right: leveraging old data and new methods to illustrate the critical role of epistasis in genetics and evolution
- Why not Y naught
Repositories Watched GitHub repositories — lab code and key collaborator repos Each repo page shows README summary, recent commit activity, and cross-links to the papers whose analyses live in that code. Private repos never render here.
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